Transcript: ENSDART00000148725.3 gch1-202

Description

GTP cyclohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-5]

Gene Synonyms

gch1a, wu:fc16b10, zgc:195269

Location

About this transcript

This transcript has 5 exons, is associated with 392 variant alleles and maps to 61 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103405.5	gch1-201	5184	251aa	ENSDARP00000094181.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FGQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180511.1	gch1-203	493	104aa	ENSDARP00000151543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RRY9	-
ENSDART00000148725.3	gch1-202	642	99aa	ENSDARP00000124435.1	Nonsense mediated decay	F8W3B2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 642 bps, Translation length: 99 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148725.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.