Transcript: ENSDART00000148697.2 ssr2-201

Description

signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]

Gene Synonyms

TRAP[b], translocon-associated protein beta, wu:fb75b04, zgc:92180

Location

Chromosome 19: 11,231,512-11,238,620 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 354 variant alleles and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005230.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149169.3	ssr2-202	1043	186aa	ENSDARP00000123966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W477	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000163921.2	ssr2-203	621	184aa	ENSDARP00000133134.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHQ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148697.2	ssr2-201	414	138aa	ENSDARP00000124316.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3Y3	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 414 bps, Translation length: 138 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000148697.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148697.2 ssr2-201

Summary

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Transcript: ENSDART00000148697.2 ssr2-201

Summary

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