Transcript: ENSDART00000148678.3 gabrb3-202

Description

gamma-aminobutyric acid type A receptor beta3 subunit [Source:ZFIN;Acc:ZDB-GENE-101102-2]

Location

Chromosome 6: 38,427,357-38,476,961 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 1322 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000023771.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087300.7	gabrb3-201	3594	532aa	ENSDARP00000081734.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EXG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000170612.2	gabrb3-203	3174	498aa	ENSDARP00000134691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ILP2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000148678.3	gabrb3-202	812	199aa	ENSDARP00000123909.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4K2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 812 bps, Translation length: 199 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000148678.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148678.3 gabrb3-202

Summary

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Transcript: ENSDART00000148678.3 gabrb3-202

Summary

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