Transcript: ENSDART00000148668.3 CBX1-204

Description

chromobox homolog 1b (HP1 beta homolog Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040625-68]

Location

Chromosome 12: 28,877,794-28,881,661 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 21 domains and features, is associated with 245 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000054442.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136593.3	CBX1-206	1704	203aa	ENSDARP00000113004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQ71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000039667.7	CBX1-207	1656	203aa	ENSDARP00000039666.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQ71	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139923.4	CBX1-203	1050	127aa	ENSDARP00000127180.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JB43	-
ENSDART00000148459.3	CBX1-205	866	127aa	ENSDARP00000127465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JB43	-
ENSDART00000148912.2	CBX1-202	784	89aa	ENSDARP00000123965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148668.3	CBX1-204	546	155aa	ENSDARP00000124293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148991.2	CBX1-201	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 546 bps, Translation length: 155 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000148668.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148668.3 CBX1-204

Summary

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Transcript: ENSDART00000148668.3 CBX1-204

Summary

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