Transcript: ENSDART00000148613.2 NELFE-201

Description

negative elongation factor complex member E [Source:ZFIN;Acc:ZDB-GENE-040718-69]

Location

Chromosome 19: 26,928,624-26,931,433 forward strand.

About this transcript

This transcript has 5 exons, is associated with 165 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000004343.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148877.3	NELFE-204	1638	346aa	ENSDARP00000124545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187396.1	NELFE-205	3119	394aa	ENSDARP00000154852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000188978.1	NELFE-206	2928	346aa	ENSDARP00000150604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWQ2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148439.3	NELFE-203	1202	322aa	ENSDARP00000124298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149988.3	NELFE-202	779	190aa	ENSDARP00000124636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148613.2	NELFE-201	322	71aa	ENSDARP00000124025.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 322 bps, Translation length: 71 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148613.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148613.2 NELFE-201

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Transcript: ENSDART00000148613.2 NELFE-201

Summary

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