Transcript: ENSDART00000148574.2 eif2b4-203

Description

eukaryotic translation initiation factor 2B, subunit 4 delta [Source:ZFIN;Acc:ZDB-GENE-030131-955]

Gene Synonyms

si:ch211-101l18.4, wu:fb54a09, zgc:110790

Location

Chromosome 20: 19,521,313-19,530,751 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 323 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000014004.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125830.4	eif2b4-201	2120	540aa	ENSDARP00000106707.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RIE1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000179566.2	eif2b4-205	6263	554aa	ENSDARP00000143268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y8J6	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000148574.2	eif2b4-203	578	192aa	ENSDARP00000124011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3W3	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000148655.2	eif2b4-204	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000148555.2	eif2b4-202	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 578 bps, Translation length: 192 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000148574.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148574.2 eif2b4-203

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Transcript: ENSDART00000148574.2 eif2b4-203

Summary

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