Transcript: ENSDART00000148538.2 ptprja-201

Description

protein tyrosine phosphatase receptor type Ja [Source:ZFIN;Acc:ZDB-GENE-030131-8301]

Location

About this transcript

This transcript has 4 exons, is associated with 2 variant alleles and maps to 21 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149991.2	ptprja-203	5618	1650aa	ENSDARP00000124678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B6HY54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148538.2	ptprja-201	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000148577.3	ptprja-202	423	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 493 bps,

Version

ENSDART00000148538.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.