Transcript: ENSDART00000148536.2 GK3-204

Description

zgc:172295 [Source:ZFIN;Acc:ZDB-GENE-080204-72]

Location

About this transcript

This transcript has 19 exons, is annotated with 14 domains and features, is associated with 436 variant alleles and maps to 250 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000148536.2	GK3-204	2066	534aa	ENSDARP00000124947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148522.3	GK3-203	915	100aa	ENSDARP00000124087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000148674.3	GK3-201	752	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000150127.2	GK3-202	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 2,066 bps, Translation length: 534 residues

Version

ENSDART00000148536.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.