Transcript: ENSDART00000148530.2 lpcat4-202

Description

lysophosphatidylcholine acyltransferase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5777]

Gene Synonyms

wu:fb10c07, wu:fi17g10, zgc:77292

Location

About this transcript

This transcript has 9 exons, is associated with 281 variant alleles and maps to 74 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000050687.6	lpcat4-201	2124	508aa	ENSDARP00000050686.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QD35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148530.2	lpcat4-202	837	77aa	ENSDARP00000124058.1	Nonsense mediated decay	F8W3R6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 837 bps, Translation length: 77 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148530.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.