Transcript: ENSDART00000148475.2 cspg5a-202

Description

chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]

Location

About this transcript

This transcript has 6 exons, is annotated with 29 domains and features, is associated with 1266 variant alleles and maps to 166 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148475.2	cspg5a-202	2265	532aa	ENSDARP00000124012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3W2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102305.5	cspg5a-201	5148	507aa	ENSDARP00000093081.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PCZ4	-
ENSDART00000193214.1	cspg5a-204	5091	488aa	ENSDARP00000148611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RMD7	-
ENSDART00000148635.2	cspg5a-203	1370	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,265 bps, Translation length: 532 residues

Version

ENSDART00000148475.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.