Transcript: ENSDART00000148466.3 SCAMP2-202

Description

secretory carrier membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2702]

Location

About this transcript

This transcript has 10 exons, is associated with 647 variant alleles and maps to 151 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000053405.6	SCAMP2-201	1887	326aa	ENSDARP00000053404.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZV08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148466.3	SCAMP2-202	1520	262aa	ENSDARP00000124098.1	Nonsense mediated decay	-	-
ENSDART00000148694.2	SCAMP2-204	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000148374.3	SCAMP2-203	661	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 1,520 bps, Translation length: 262 residues

Version

ENSDART00000148466.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.