Transcript: ENSDART00000148388.2 SMOX-204

Description

spermine oxidase [Source:ZFIN;Acc:ZDB-GENE-031201-3]

Location

About this transcript

This transcript has 6 exons, is associated with 6 variant alleles and maps to 182 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000053685.6	SMOX-203	2220	539aa	ENSDARP00000053684.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A458	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192672.1	SMOX-206	568	182aa	ENSDARP00000145065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148388.2	SMOX-204	965	216aa	ENSDARP00000124113.1	Nonsense mediated decay	-	-
ENSDART00000145170.2	SMOX-202	836	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000136879.3	SMOX-201	774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000124874.4	SMOX-205	1902	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 965 bps, Translation length: 216 residues

Version

ENSDART00000148388.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.