Transcript: ENSDART00000148270.2 lrch4-202

Description

leucine-rich repeats and calponin homology (CH) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-060503-749]

Location

About this transcript

This transcript has 17 exons, is annotated with 43 domains and features, is associated with 715 variant alleles and maps to 171 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000184088.1	lrch4-203	4239	709aa	ENSDARP00000150850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QBK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148270.2	lrch4-202	2106	681aa	ENSDARP00000117688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000098622.5	lrch4-201	2064	687aa	ENSDARP00000089393.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9Q9D4	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,106 bps, Translation length: 681 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148270.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.