Transcript: ENSDART00000148258.2 PTCH1-201

Description

patched 1 [Source:ZFIN;Acc:ZDB-GENE-980526-196]

Location

About this transcript

This transcript has 21 exons, is annotated with 62 domains and features, is associated with 1966 variant alleles and maps to 162 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000007640.10	PTCH1-202	4834	1475aa	ENSDARP00000025418.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8E2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148258.2	PTCH1-201	4068	1355aa	ENSDARP00000114906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 4,068 bps, Translation length: 1,355 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148258.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.