Transcript: ENSDART00000148135.3 SLC25A36-203

Description

solute carrier family 25 member 36a [Source:ZFIN;Acc:ZDB-GENE-040718-415]

Location

About this transcript

This transcript has 6 exons, is associated with 180 variant alleles and maps to 37 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000007333.11	SLC25A36-201	4657	311aa	ENSDARP00000004962.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GNU1 Q6DG32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148135.3	SLC25A36-203	730	97aa	ENSDARP00000140604.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000138424.2	SLC25A36-202	803	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 730 bps, Translation length: 97 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148135.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.