Transcript: ENSDART00000148131.2 nr5a5-204

Description

nuclear receptor subfamily 5, group A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4652]

Location

About this transcript

This transcript has 3 exons, is associated with 193 variant alleles and maps to 63 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125515.3	nr5a5-202	1748	537aa	ENSDARP00000105488.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DKN2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000057123.8	nr5a5-201	2049	511aa	ENSDARP00000057122.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKV6	-
ENSDART00000143096.2	nr5a5-203	765	213aa	ENSDARP00000113112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148131.2	nr5a5-204	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 758 bps,

Version

ENSDART00000148131.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.