Transcript: ENSDART00000148128.2 vps13d-203

Description

vacuolar protein sorting 13 homolog D [Source:ZFIN;Acc:ZDB-GENE-050912-1]

Location

About this transcript

This transcript has 44 exons, is annotated with 23 domains and features, is associated with 986 variant alleles and maps to 238 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046613.9	vps13d-201	11871	3956aa	ENSDARP00000046612.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F307	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148128.2	vps13d-203	6932	2233aa	ENSDARP00000115963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QAQ5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145408.2	vps13d-202	6531	2099aa	ENSDARP00000122356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QH42	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 6,932 bps, Translation length: 2,233 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000148128.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.