Transcript: ENSDART00000148119.2 PUM3-201

Description

pumilio RNA-binding family member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9808]

Location

Chromosome 10: 15,337,433-15,340,362 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 351 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000087779.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189109.1	PUM3-204	2356	629aa	ENSDARP00000153216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGX5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000154037.3	PUM3-205	2062	629aa	ENSDARP00000129484.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WGX5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000127277.4	PUM3-203	2036	601aa	ENSDARP00000108665.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148119.2	PUM3-201	829	186aa	ENSDARP00000121585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133919.2	PUM3-202	509	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 829 bps, Translation length: 186 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000148119.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148119.2 PUM3-201

Summary

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Transcript: ENSDART00000148119.2 PUM3-201

Summary

About Us

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