Transcript: ENSDART00000148018.2 npsn-204

Description

nephrosin [Source:ZFIN;Acc:ZDB-GENE-040420-2]

Location

About this transcript

This transcript has 5 exons, is associated with 7 variant alleles and maps to 168 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109463.5	npsn-202	919	280aa	ENSDARP00000100461.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1REP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000017155.8	npsn-201	1385	274aa	ENSDARP00000012180.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q05AP0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138071.2	npsn-203	922	272aa	ENSDARP00000112570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148018.2	npsn-204	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 864 bps,

Version

ENSDART00000148018.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.