Transcript: ENSDART00000147968.3 rbpms2b-207

Description

RNA binding protein, mRNA processing factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-741]

Gene Synonyms

Hermes, rbpms2, zgc:55559, zgc:77170

Location

Chromosome 7: 48,256,423-48,263,633 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 240 variant alleles and maps to 213 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079578.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000006619.8	rbpms2b-201	1911	200aa	ENSDARP00000026087.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZUL7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147968.3	rbpms2b-207	871	179aa	ENSDARP00000122203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHK7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142370.3	rbpms2b-206	764	179aa	ENSDARP00000118336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHK7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148273.2	rbpms2b-208	317	18aa	ENSDARP00000122677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QG56	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000134832.2	rbpms2b-202	768	80aa	ENSDARP00000143130.1	Nonsense mediated decay	A0A1L1QZL3	-
ENSDART00000135671.2	rbpms2b-203	832	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000139279.3	rbpms2b-205	502	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000136708.2	rbpms2b-204	730	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 871 bps, Translation length: 179 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000147968.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147968.3 rbpms2b-207

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Transcript: ENSDART00000147968.3 rbpms2b-207

Summary

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