Transcript: ENSDART00000147940.2 plxnb3-204

Description

plexin B3 [Source:ZFIN;Acc:ZDB-GENE-081104-53]

Gene Synonyms

si:dkey-208p7.1

Location

About this transcript

This transcript has 9 exons, is annotated with 17 domains and features, is associated with 1200 variant alleles and maps to 90 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000026965.11	plxnb3-201	5661	1886aa	ENSDARP00000016098.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q6L2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144838.2	plxnb3-203	3625	1095aa	ENSDARP00000121104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7J5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000147940.2	plxnb3-204	2121	660aa	ENSDARP00000113727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0V1S6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139719.2	plxnb3-202	734	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,121 bps, Translation length: 660 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000147940.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.