Transcript: ENSDART00000147887.3 gbgt1l4-205

Description

globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 4 [Source:ZFIN;Acc:ZDB-GENE-031204-4]

Gene Synonyms

FS-L4, alpha 1,3-galctosyltransferase, sb:cb1003, zgc:66417

Location

Chromosome 5: 23,789,189-23,795,690 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 44 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000068503.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099084.6	gbgt1l4-201	1591	349aa	ENSDARP00000089858.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2CED6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000134184.3	gbgt1l4-203	1671	342aa	ENSDARP00000116300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2CED5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133805.2	gbgt1l4-202	949	285aa	ENSDARP00000120652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2CED4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147887.3	gbgt1l4-205	828	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000143024.2	gbgt1l4-204	409	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 828 bps,

Version

ENSDART00000147887.3

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147887.3 gbgt1l4-205

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Transcript: ENSDART00000147887.3 gbgt1l4-205

Summary

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