Transcript: ENSDART00000147616.3 ptp4a3b-202

Description

protein tyrosine phosphatase 4A3b [Source:ZFIN;Acc:ZDB-GENE-030131-2635]

Gene Synonyms

si:ch211-251p5.5, wu:fc14a08

Location

About this transcript

This transcript has 6 exons, is annotated with 9 domains and features, is associated with 578 variant alleles and maps to 310 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147616.3	ptp4a3b-202	2629	173aa	ENSDARP00000118752.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FA22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145691.2	ptp4a3b-201	804	66aa	ENSDARP00000114815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QDY5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000182397.1	ptp4a3b-203	522	173aa	ENSDARP00000151837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FA22	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,629 bps, Translation length: 173 residues

Version

ENSDART00000147616.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.