Transcript: ENSDART00000147609.3 shc1-204

Description

SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]

Gene Synonyms

si:dkey-246i14.4, wu:fc10h03

Location

Chromosome 16: 22,782,010-22,863,348 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 25 domains and features, is associated with 908 variant alleles and maps to 120 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075437.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098400.5	shc1-201	4373	454aa	ENSDARP00000089171.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F3T0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000183963.1	shc1-205	4319	436aa	ENSDARP00000152313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QEV1	-
ENSDART00000147609.3	shc1-204	3920	449aa	ENSDARP00000123188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QCZ8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000133607.2	shc1-202	840	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000133910.3	shc1-203	740	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,920 bps, Translation length: 449 residues

Version

ENSDART00000147609.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

Transcript: ENSDART00000147609.3 shc1-204

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Transcript: ENSDART00000147609.3 shc1-204

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