Transcript: ENSDART00000147328.4 PPT1-201

Description

palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) [Source:ZFIN;Acc:ZDB-GENE-040426-2653]

Location

Chromosome 19: 43,745,454-43,750,389 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 400 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000039980.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000058491.7	PPT1-204	1609	303aa	ENSDARP00000058490.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8J6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171806.3	PPT1-205	5631	303aa	ENSDARP00000139466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8J6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151309.2	PPT1-203	836	194aa	ENSDARP00000126214.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147328.4	PPT1-201	800	206aa	ENSDARP00000126240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000142202.3	PPT1-202	904	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 800 bps, Translation length: 206 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000147328.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147328.4 PPT1-201

Summary

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Transcript: ENSDART00000147328.4 PPT1-201

Summary

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