Transcript: ENSDART00000147026.3 shroom1-201

Description

shroom family member 1 [Source:ZFIN;Acc:ZDB-GENE-091204-385]

Gene Synonyms

si:ch211-225b14.6

Location

About this transcript

This transcript has 8 exons, is annotated with 28 domains and features, is associated with 1123 variant alleles and maps to 66 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147026.3	shroom1-201	4265	1421aa	ENSDARP00000114452.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJJ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000179940.1	shroom1-203	8860	1266aa	ENSDARP00000149225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q7X6	-
ENSDART00000164806.2	shroom1-202	4269	1347aa	ENSDARP00000139677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ITP7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 4,265 bps, Translation length: 1,421 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000147026.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.