Transcript: ENSDART00000146924.4 trmt1l-202

Description

tRNA methyltransferase 1-like [Source:ZFIN;Acc:ZDB-GENE-041014-189]

Gene Synonyms

im:7142104, si:dkeyp-11g8.5

Location

About this transcript

This transcript has 16 exons, is annotated with 14 domains and features, is associated with 339 variant alleles and maps to 213 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146924.4	trmt1l-202	2523	694aa	ENSDARP00000114812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QK14	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000183596.1	trmt1l-204	1932	643aa	ENSDARP00000156040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QS20	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139648.2	trmt1l-201	641	213aa	ENSDARP00000121707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3Q4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000153031.2	trmt1l-203	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,523 bps, Translation length: 694 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000146924.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.