Transcript: ENSDART00000146856.4 rbfox3b-204

Description

RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46]

Gene Synonyms

rbfox3l, si:ch73-322f21.1

Location

Chromosome 3: 8,323,587-8,388,344 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 1279 variant alleles and maps to 83 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000074310.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000132949.4	rbfox3b-202	1254	303aa	ENSDARP00000126058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000183527.1	rbfox3b-205	1311	202aa	ENSDARP00000149975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000113140.4	rbfox3b-201	912	303aa	ENSDARP00000125909.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146856.4	rbfox3b-204	861	200aa	ENSDARP00000125707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000190238.1	rbfox3b-206	819	272aa	ENSDARP00000155985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000140884.3	rbfox3b-203	425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 861 bps, Translation length: 200 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000146856.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000146856.4 rbfox3b-204

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Transcript: ENSDART00000146856.4 rbfox3b-204

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