Transcript: ENSDART00000146853.3 ncam1b-204

Description

neural cell adhesion molecule 1b [Source:ZFIN;Acc:ZDB-GENE-010822-2]

Gene Synonyms

ncam3, zPCAM

Location

Chromosome 15: 18,377,777-18,432,673 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 16 domains and features, is associated with 870 variant alleles and maps to 84 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007220.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000019006.9	ncam1b-201	3738	1031aa	ENSDARP00000021088.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QJ12	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000142010.3	ncam1b-203	3738	1031aa	ENSDARP00000114314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QIV2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000136208.2	ncam1b-202	961	268aa	ENSDARP00000118309.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QMM3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146853.3	ncam1b-204	812	270aa	ENSDARP00000115412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q720	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 812 bps, Translation length: 270 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000146853.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146853.3 ncam1b-204

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Transcript: ENSDART00000146853.3 ncam1b-204

Summary

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