Transcript: ENSDART00000146815.2 hnrnpl2-203

Description

heteroous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]

Gene Synonyms

fb53f10, fp61c04, hnrnpl, hnrpl, wu:fb53f10, wu:fp61c04, zgc:66175

Location

Chromosome 15: 5,794,963-5,797,918 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 261 variant alleles and maps to 53 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000059303.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142334.3	hnrnpl2-202	1592	522aa	ENSDARP00000115723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8KC22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171528.2	hnrnpl2-205	2064	499aa	ENSDARP00000139075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IVC0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000158612.2	hnrnpl2-204	829	56aa	ENSDARP00000133656.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135442.3	hnrnpl2-201	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146815.2	hnrnpl2-203	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 636 bps,

Version

ENSDART00000146815.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000146815.2 hnrnpl2-203

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Transcript: ENSDART00000146815.2 hnrnpl2-203

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