Transcript: ENSDART00000146720.3 lin7c-201

Description

lin-7 homolog C (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041011-2]

Location

About this transcript

This transcript has 5 exons, is annotated with 17 domains and features, is associated with 339 variant alleles and maps to 433 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146720.3	lin7c-201	4301	201aa	ENSDARP00000118823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q66IB0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000188398.1	lin7c-202	1523	204aa	ENSDARP00000154898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 4,301 bps, Translation length: 201 residues

Version

ENSDART00000146720.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.