Transcript: ENSDART00000146535.2 tspearb-202

Description

thrombospondin-type laminin G domain and EAR repeats b [Source:ZFIN;Acc:ZDB-GENE-030131-4270]

Gene Synonyms

fc86e12, si:ch211-244a17.4, tspear, wu:fc86e12

Location

About this transcript

This transcript has 12 exons, is annotated with 23 domains and features, is associated with 609 variant alleles and maps to 180 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000122558.3	tspearb-201	5043	666aa	ENSDARP00000106732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F9F5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000146535.2	tspearb-202	2234	665aa	ENSDARP00000117768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,234 bps, Translation length: 665 residues

Version

ENSDART00000146535.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.