Transcript: ENSDART00000146533.2 elavl1a-203

Description

ELAV like RNA binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-990415-245]

Location

Chromosome 2: 37,129,232-37,134,186 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 161 variant alleles and maps to 53 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038695.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146123.3	elavl1a-202	3337	340aa	ENSDARP00000120506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2BIL8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000040427.6	elavl1a-201	2193	324aa	ENSDARP00000040426.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000146533.2	elavl1a-203	581	105aa	ENSDARP00000119969.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 581 bps, Translation length: 105 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000146533.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146533.2 elavl1a-203

Summary

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Transcript: ENSDART00000146533.2 elavl1a-203

Summary

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