Transcript: ENSDART00000146468.3 vps50-202

Description

VPS50 EARP/GARPII complex subunit [Source:ZFIN;Acc:ZDB-GENE-060503-325]

Gene Synonyms

ccdc132, si:ch211-128d6.1, si:ch211-287b5.1, si:ch211-77k19.1

Location

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 603 variant alleles and maps to 298 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110699.4	vps50-201	2898	965aa	ENSDARP00000101077.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R0A4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146468.3	vps50-202	2100	278aa	ENSDARP00000115592.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TNV7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,100 bps, Translation length: 278 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000146468.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.