Transcript: ENSDART00000146415.2 SAMD11-202

Description

sterile alpha motif domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-060428-2]

Location

About this transcript

This transcript has 3 exons, is associated with 319 variant alleles and maps to 22 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146463.3	SAMD11-201	4308	874aa	ENSDARP00000112558.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F6B2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189843.1	SAMD11-204	2130	709aa	ENSDARP00000152637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132418.2	SAMD11-203	848	167aa	ENSDARP00000116307.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146415.2	SAMD11-202	1054	171aa	ENSDARP00000118743.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 1,054 bps, Translation length: 171 residues

Version

ENSDART00000146415.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.