Transcript: ENSDART00000146400.3 ST8SIA5-204

Description

ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]

Location

Chromosome 21: 5,209,476-5,226,424 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 352 variant alleles and maps to 103 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036584.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102539.4	ST8SIA5-201	1233	410aa	ENSDARP00000093315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0P7H3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000102536.2	ST8SIA5-203	1125	374aa	ENSDARP00000093312.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0P7H4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000053148.3	ST8SIA5-202	1032	343aa	ENSDARP00000053147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000146400.3	ST8SIA5-204	573	111aa	ENSDARP00000118352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 573 bps, Translation length: 111 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000146400.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146400.3 ST8SIA5-204

Summary

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Transcript: ENSDART00000146400.3 ST8SIA5-204

Summary

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