Transcript: ENSDART00000146326.3 GMDS-203

Description

GDP-mannose 4,6-dehydratase [Source:ZFIN;Acc:ZDB-GENE-050419-45]

Location

Chromosome 20: 26,775,812-26,822,522 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 8 domains and features, is associated with 638 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000026629.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046764.9	GMDS-202	1693	370aa	ENSDARP00000046763.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000143267.2	GMDS-201	2083	91aa	ENSDARP00000122672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000103234.5	GMDS-204	1712	377aa	ENSDARP00000094011.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPT3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000146326.3	GMDS-203	880	257aa	ENSDARP00000119997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 880 bps, Translation length: 257 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000146326.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146326.3 GMDS-203

Summary

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Transcript: ENSDART00000146326.3 GMDS-203

Summary

About Us

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