Transcript: ENSDART00000146249.3 matn3b-203

Description

matrilin 3b [Source:ZFIN;Acc:ZDB-GENE-050221-9]

Gene Synonyms

zgc:123028

Location

Chromosome 13: 32,627,615-32,635,859 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 209 variant alleles and maps to 287 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069265.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145395.3	matn3b-202	1484	478aa	ENSDARP00000122906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5NIW0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000146249.3	matn3b-203	1352	434aa	ENSDARP00000116044.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZD91	-
ENSDART00000100650.6	matn3b-201	1144	299aa	ENSDARP00000091423.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5NJJ7	-
ENSDART00000148040.3	matn3b-204	1099	343aa	ENSDARP00000123200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5NJJ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,352 bps, Translation length: 434 residues

Version

ENSDART00000146249.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000146249.3 matn3b-203

Summary

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Transcript: ENSDART00000146249.3 matn3b-203

Summary

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