Transcript: ENSDART00000146093.3 sort1a-202

Description

sortilin 1a [Source:NCBI gene;Acc:406511]

Gene Synonyms

sort1, zgc:85953

Location

Chromosome 11: 36,281,610-36,341,028 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 16 domains and features, is associated with 1053 variant alleles and maps to 230 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029402.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159752.3	sort1a-203	5938	815aa	ENSDARP00000131691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IEP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000146093.3	sort1a-202	4687	814aa	ENSDARP00000121875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7B8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134481.2	sort1a-201	734	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 4,687 bps, Translation length: 814 residues

Version

ENSDART00000146093.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146093.3 sort1a-202

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Transcript: ENSDART00000146093.3 sort1a-202

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