Transcript: ENSDART00000146010.2 pitpnc1b-204

Description

phosphatidylinositol transfer protein cytoplasmic 1b [Source:ZFIN;Acc:ZDB-GENE-041114-158]

Gene Synonyms

wu:fb02h08, zgc:101640

Location

About this transcript

This transcript has 6 exons, is associated with 553 variant alleles and maps to 40 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114944.5	pitpnc1b-202	2089	289aa	ENSDARP00000103640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3T9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000038196.7	pitpnc1b-201	867	288aa	ENSDARP00000033276.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FAH7	-
ENSDART00000146010.2	pitpnc1b-204	693	60aa	ENSDARP00000114144.1	Nonsense mediated decay	E9QC44	-
ENSDART00000141308.3	pitpnc1b-203	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 693 bps, Translation length: 60 residues

Version

ENSDART00000146010.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]