Transcript: ENSDART00000145978.3 rttn-203

Description

rotatin [Source:ZFIN;Acc:ZDB-GENE-090609-5]

Gene Synonyms

si:ch211-14k8.1

Location

Chromosome 24: 15,200,529-15,208,414 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 282 variant alleles and maps to 12 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000004131.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000183176.1	rttn-204	8188	2271aa	ENSDARP00000156549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QSU5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000006930.11	rttn-201	8080	2235aa	ENSDARP00000023024.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F7S8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000142473.3	rttn-202	1076	331aa	ENSDARP00000116607.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QB45	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145978.3	rttn-203	702	234aa	ENSDARP00000116954.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHG2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 702 bps, Translation length: 234 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000145978.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145978.3 rttn-203

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Transcript: ENSDART00000145978.3 rttn-203

Summary

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