Transcript: ENSDART00000145845.2 vps41-203

Description

VPS41 subunit of HOPS complex [Source:NCBI gene (formerly Entrezgene);Acc:563215]

Location

Chromosome 24: 9,898,062-9,949,362 reverse strand.

About this transcript

This transcript has 24 exons, is associated with 1821 variant alleles and maps to 68 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000063573.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143390.3	vps41-202	3103	855aa	ENSDARP00000116849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000092975.7	vps41-201	2748	854aa	ENSDARP00000087407.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB13AB89 E7F590	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000184953.1	vps41-204	2703	839aa	ENSDARP00000144910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000145845.2	vps41-203	2423	736aa	ENSDARP00000120107.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 2,423 bps, Translation length: 736 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000145845.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145845.2 vps41-203

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Transcript: ENSDART00000145845.2 vps41-203

Summary

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