Transcript: ENSDART00000145745.3 LRRFIP2-203

Description

leucine rich repeat (in FLII) interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7781]

Location

Chromosome 13: 42,625,772-42,672,791 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 1303 variant alleles and maps to 93 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000010400.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099738.6	LRRFIP2-201	2242	405aa	ENSDARP00000090511.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PGV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169083.2	LRRFIP2-206	2326	429aa	ENSDARP00000135819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMS4	-
ENSDART00000099729.5	LRRFIP2-205	1235	161aa	ENSDARP00000090502.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000133848.3	LRRFIP2-204	509	131aa	ENSDARP00000122794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145745.3	LRRFIP2-203	1006	227aa	ENSDARP00000123994.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141115.2	LRRFIP2-202	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 7, Transcript length: 1,006 bps, Translation length: 227 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000145745.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145745.3 LRRFIP2-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000145745.3 LRRFIP2-203

Summary

About Us

Get help

Our sister sites

Follow us