Transcript: ENSDART00000145603.2 SMARCD3-201

Description

SWI/SNF related BAF chromatin remodeling complex subunit D3a [Source:ZFIN;Acc:ZDB-GENE-070912-491]

Location

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 478 variant alleles and maps to 29 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000137531.3	SMARCD3-203	1488	475aa	ENSDARP00000114118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QC50	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140026.3	SMARCD3-202	2253	453aa	ENSDARP00000122275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000056641.6	SMARCD3-204	1413	470aa	ENSDARP00000056640.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000145603.2	SMARCD3-201	539	179aa	ENSDARP00000120548.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 539 bps, Translation length: 179 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000145603.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.