Transcript: ENSDART00000145550.4 PPM1K-201

Description

protein phosphatase, Mg2+/Mn2+ dependent 1Kb [Source:ZFIN;Acc:ZDB-GENE-050306-8]

Location

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 336 variant alleles and maps to 85 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148285.4	PPM1K-203	2996	372aa	ENSDARP00000124125.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P874	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145550.4	PPM1K-201	908	188aa	ENSDARP00000113331.2	Nonsense mediated decay	F6PA41	-
ENSDART00000150677.2	PPM1K-202	827	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 908 bps, Translation length: 188 residues

Version

ENSDART00000145550.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.