Transcript: ENSDART00000145474.3 si:dkey-14d8.1-202

Description

si:dkey-14d8.1 [Source:ZFIN;Acc:ZDB-GENE-041210-86]

Location

Chromosome 4: 5,370,056-5,371,622 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 184 variant alleles and maps to 94 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000095332.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000150697.3	si:dkey-14d8.1-203	5928	784aa	ENSDARP00000125338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0WER0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189559.1	si:dkey-14d8.1-206	2766	622aa	ENSDARP00000146071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000184963.1	si:dkey-14d8.1-205	2219	661aa	ENSDARP00000150826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000133423.2	si:dkey-14d8.1-201	503	168aa	ENSDARP00000119291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000150788.2	si:dkey-14d8.1-204	349	94aa	ENSDARP00000125271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145474.3	si:dkey-14d8.1-202	701	92aa	ENSDARP00000122558.2	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 701 bps, Translation length: 92 residues

Version

ENSDART00000145474.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145474.3 si:dkey-14d8.1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000145474.3 si:dkey-14d8.1-202

Summary

About Us

Get help

Our sister sites

Follow us