Transcript: ENSDART00000145451.3 astn1-204

Description

astrotactin 1 [Source:ZFIN;Acc:ZDB-GENE-050320-140]

Gene Synonyms

zgc:113405, zgc:158703

Location

About this transcript

This transcript has 13 exons, is annotated with 12 domains and features, is associated with 3290 variant alleles and maps to 290 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000077216.6	astn1-201	6799	1305aa	ENSDARP00000071684.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q5X4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145451.3	astn1-204	2344	714aa	ENSDARP00000123506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QEP2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000134926.2	astn1-202	1288	177aa	ENSDARP00000119757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2Z4W2	-
ENSDART00000141796.2	astn1-203	937	114aa	ENSDARP00000117505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QD43	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,344 bps, Translation length: 714 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000145451.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.