Transcript: ENSDART00000145360.2 si:dkey-194e6.2-203

Description

si:dkey-194e6.2 [Source:ZFIN;Acc:ZDB-GENE-100921-54]

Location

Chromosome 23: 40,791,433-40,792,128 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 3 domains and features, is associated with 33 variant alleles and maps to 40 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000095001.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000141216.2	si:dkey-194e6.2-201	1024	291aa	ENSDARP00000114789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDH7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145360.2	si:dkey-194e6.2-203	580	193aa	ENSDARP00000117372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QP39	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000145116.2	si:dkey-194e6.2-202	393	131aa	ENSDARP00000119290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6Q1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 580 bps, Translation length: 193 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000145360.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145360.2 si:dkey-194e6.2-203

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Transcript: ENSDART00000145360.2 si:dkey-194e6.2-203

Summary

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