Transcript: ENSDART00000145306.3 si:ch211-220f16.1-204

Description

si:ch211-220f16.1 [Source:ZFIN;Acc:ZDB-GENE-070912-198]

Location

Chromosome 18: 30,028,160-30,029,988 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 8 variant alleles and maps to 130 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000093977.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000145306.3	si:ch211-220f16.1-204	397	110aa	ENSDARP00000119177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140825.3	si:ch211-220f16.1-203	1393	78aa	ENSDARP00000118049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000136810.3	si:ch211-220f16.1-201	1024	56aa	ENSDARP00000114408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000139750.2	si:ch211-220f16.1-202	415	68aa	ENSDARP00000121926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 397 bps, Translation length: 110 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000145306.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145306.3 si:ch211-220f16.1-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000145306.3 si:ch211-220f16.1-204

Summary

About Us

Get help

Our sister sites

Follow us