Transcript: ENSDART00000145178.2 zgc:100829-204

Description

zgc:100829 [Source:ZFIN;Acc:ZDB-GENE-040801-54]

Location

Chromosome 21: 28,749,720-28,772,641 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 643 variant alleles and maps to 134 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000015557.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000014058.8	zgc:100829-201	2300	307aa	ENSDARP00000019873.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DC07	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000137874.3	zgc:100829-203	849	210aa	ENSDARP00000113559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145178.2	zgc:100829-204	842	173aa	ENSDARP00000123367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000137372.2	zgc:100829-202	1414	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 842 bps, Translation length: 173 residues

Version

ENSDART00000145178.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145178.2 zgc:100829-204

Summary

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Transcript: ENSDART00000145178.2 zgc:100829-204

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